:mod:`geckopy.experimental.molecular_weights`
=============================================

.. py:module:: geckopy.experimental.molecular_weights

.. autoapi-nested-parse::

   Build dataframe with protein reactions identifiers, Uniprot IDs and MW.



Module Contents
---------------


Functions
~~~~~~~~~

.. autoapisummary::

   geckopy.experimental.molecular_weights.get_uniprot
   geckopy.experimental.molecular_weights.parse_mw
   geckopy.experimental.molecular_weights.extract_proteins


.. function:: get_uniprot(query: str) -> str

   Get uniprot information corresponding to a query.

   :param query: an UNIPROT ID(s), separated by spaces
   :type query: str


.. function:: parse_mw(uniprot_info: str) -> str

   Get all MW of uniprot text (Dalton).


.. function:: extract_proteins(model, all_proteins: Optional[Dict] = None, key_fn=lambda x: UNIPROT_PATTERN.match(x.id)[1]) -> pandas.DataFrame

   Generate the dataframe protein reactions IDs, Uniprot IDs and MW.

   :param model:
   :type model: cobra.Model
   :param all_proteins: dict of UNIPROT IDs to protein reaction identifiers as in the model.
                        If None are supplied, the function will try to identify them with a
                        simple regex.
   :type all_proteins: dict
   :param key_fn: mapping to extract the uniprot id from the protein. Default: regex
                  matching on the protein id.
   :type key_fn: function

   :returns: **df**
   :rtype: pd.DataFrame