:mod:`geckopy.reaction`
=======================

.. py:module:: geckopy.reaction

.. autoapi-nested-parse::

   Extend cobra.Reaction to point to proteins.



Module Contents
---------------

Classes
~~~~~~~

.. autoapisummary::

   geckopy.reaction.Reaction



.. class:: Reaction

   Bases: :class:`cobra.Reaction`

   geckopy.Reaction has an additional attribute `.proteins`.

   .. method:: proteins(self)
      :property:

      Retrieve metabolites participating in the reaction that are proteins.


   .. method:: add_protein(self, id: str, kcat: float, concentration: Optional[float] = None, name: Optional[str] = None)

      Add a protein to the reaction.

      :param id:
      :type id: str
      :param kcat:
      :type kcat: float (1/s)
      :param concentration:
      :type concentration: float
      :param name:
      :type name: str